.. openva_pipeline documentation master file, created by
   sphinx-quickstart on Thu Oct 25 13:00:38 2018.
   You can adapt this file completely to your liking, but it should at least
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Welcome to openva_pipeline's documentation!
===========================================

The `OpenVA Pipeline
<https://github.com/verbal-autopsy-software/openva_pipeline>`_ automates the
processing of verbal autopsy (VA) data from an `ODK Central server
<https://docs.getodk.org/central-intro/>`_, through the `openVA
<https://cran.r-project.org/web/packages/openVA/index.html>`_ library of VA
algorithms from the `R <https://cran.r-project.org/>`_ statistical software,
to a DHIS2 server (with the `VA DHIS2 Program <https://github.com/verbal-autopsy-software/DHIS2_VA_program>`_).

.. toctree::
   :maxdepth: 2
   :caption: Contents:

   Software Requirements <software>
   Installation Guide <install>
   Pipeline Configuration <config>
   Vignette: Example Run  <vignette>
   Documentation for classes, functions, and methods <help>


Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`